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IR communication between flirc usb and MCU


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I am trying to develop an MCU that goes into a remote control. 
I use it as an IR Transceiver to test the MCU, and I want to make FLIRC execute a specific protocol by receiving a signal from a MCU (not a keyboard command).
For example, I want to send a 0x01 signal to FLIRC and then output a specific image on the application(in linux) screen according to that signal.
Can I create a custom application using FLIRC SDK code?
Edited by himo
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