Some data.
The chip on the Pi 2 is only about 0.2mm less in height than the chip on the Pi. It isn't, however, in the same place. It's slightly off to the left. The left edge of the Pi 2 chip is about 3mm out of the edge of the Pi chip, and subsequently, the heatsink. It actually does hang over on the right now. By how much cooling is affected all depends on what exactly is on those leftmost 3mm.
It is, however, an extreme bother to people with OCD, because it simply doesn't fit from a purely visual aspect. Saying that, will we see a revision of the Flirc case to accomodate the exact placement of the Pi 2 chip?