I have interest in this [old] topic as well. I've got a setup where I've got two raspberry pi's relaying iR signals using web services. My FLIRC is setup for a Harmony and when trying to configure lirc to understand the signals it fails to match any known protocols. I was able to get the buttons to map in RAW mode, but I'd much prefer a standardized configuration. Can we get a dev to chime in and tell us what iR protocol you guys are using when configured with a Harmony remote? I've attached the raw config I came up with for reference.
lircd.conf