For some reason, the windows software was artificially flagged as having a virus. This was a chrome / firefox issue. When you download a file, they do an online virus scanner, and one of the 20 scans falsely flagged it. I could not figure it out. Once downloaded, no virus existed in the software.
The only thing I could think of, was the installer for the Flirc Gen1 Drivers. They are not needed for the Gen2 device, since the new device runs without drivers.
So for now, let's rely on this. I will be putting together a support page specifically for the gen1 hardware, which will have the driver installer as a separate installer until I can figure this out. I do not plan on discontinuing support for gen1.