Just a follow up - I received my Pi 2 today and already had my Flirc case. The board fits fine in the case, but it did not appear as if the thermal pad made contact with the heatsink post at all. The board easily rocked out of the case when I turned it on its side suggesting that there was not adhesion to the pad at all. Also as DocG noted, the post is noticeably off center.
For now, I removed the pad an am just running the board in the case.
EDIT:
Without the thermal pad contact, temps run a little hotter (as one might expect with less air circulation and no direct thermal transfer). My unscientific measurements:
In Case Alone (68F room)
Idle 40-42C 38C
1 busy core 45C 44C
2 50C 49C
3 55C 54C
4 60C 57.5C